Data Science in Omics Introduction

An OMICS Course Part 1: Shell, Organizing and Genomics

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Assignment Schedule

Week Language Lesson Reading Lecture Assignment
1 Shell Shell Introduction
2 Shell Shell Files and Directories
3 Shell Shell Pipes and Filters
4 Shell Introduction to Loops
5 Shell Shell grep and find
6 Shell Genomics Shell Intro
7 Shell Genomics Starting the Project
8 Shell Genomics First Assembly
9 Shell Genomics Advanced Shell
10 Shell Genomics Reads Quality Control
11 Shell Genomics Read Quality Trimming
12 Shell Genomics Variant Calling Workflow
13 Shell Genomics Scripting Variant Calling
14 R Introduction to R and RStudio
15 R Genomics in RStudio