Shell
- Shell Introduction
- Shell Files and Directories
- Shell Pipes and Filters
- Shell Introduction to Loops
- Shell grep and find
- Genomics Read Quality Control
- Genomics Shell Intro
- Genomics Starting the Project
- Genomics First Assembly Workshop
- Genomics Advanced Shell
- Genomics Read Quality Trimming
- Genomics Variant Calling Workflow
- Genomics Scripting Variant Calling
R
- Introduction to R and RStudio
- Genomics in RStudio
- Genomics RStudio Coercion
- Working with Data
- Data Visualization
- Programming Fundamentals 1
- Programming Fundamentals 2
- Working with Spatial Data
- Working with Databases
- Version Control Basics
- Putting It All Together
- Low-level Database Management Libraries
- Advanced Topics
- Additional Resources