Shell
- Shell Introduction
- Shell Files and Directories
- Shell Pipes and Filters
- Genomics Shell Intro
- Genomics Reads Quality Control
- Genomics Starting the Project
- Genomics First Assembly
- Genomics Advanced Shell
- Genomics Read Quality Trimming
- Genomics Variant Calling Workflow
- Genomics Scripting Variant Calling
R
- Introduction to R and RStudio
- Starting Genomics in RStudio2
- RStudio in Genomics dplyr
- RStudio in Genomics Coercion
- Working with Data
- Data Visualization
- Programming Fundamentals 1
- Programming Fundamentals 2
knitr- Working with Spatial Data
- Working with Databases
- Version Control Basics
- Putting It All Together