Shell
- Shell Introduction
- Shell Files and Directories
- Shell Pipes and Filters
- Shell Introduction to Loops
- Genomics Shell Data Wrangling
- Genomics Reads Quality Control
- Genomics Read Quality Trimming
- Genomics Starting the Project
- Genomics First Assembly
- Genomics Advanced Shell
- Genomics Read Quality Trimming
- Genomics Variant Calling
- Genomics Automating a Variant Calling Workflow
- Genomics Advanced Loops
R
- Introduction to R and RStudio
- Working with Data
- Genomics RStudio Dataframes
- Genomics Coercing Data
- Data Visualization
- Programming Fundamentals 1
- Programming Fundamentals 2
- Working with Spatial Data
- Working with Databases
- Version Control Basics
- Putting It All Together
- String Exercises
- Low-level Database Management Libraries
- Advanced Topics
- Review